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"154532046:A;154532055:CTCT;154532082:G;154532083:G;154532085:C;154532086:C;154532203:G;154532231:T;154532245:G;154532257:C;154532258:G;154532264:C;154532265:C;154532269:C;154532278:T;154532279:C;154532389:C;154532390:G;154532392:A;154532403:C;154532408:T;154532411:C;154532432:G;154532434:C;154532458:A;154532459:C;154532570:G;154532590:G;154532608:C;154532623:T;154532625:C;154532626:C;154532628:G;154532629:G;154532634:T;154532639:C;154532649:G;154532661:T;154532662:C;154532667:G;154532674:C;154532676:C;154532677:G;154532679:A;154532688:T;154532692:T;154532694:C;154532695:G;154532698:T;154532699:G;154532700:C;154532701:A;154532713:A;154532715:A;154532716:T;154532722:C;154532752:CGGCCTTGCGCTCGTTCAG;154532758:T;154532765:G;154532772:G;154532773:C;154532797:G;154532802:C;154532945:C;154532956:T;154532969:G;154532987:T;154532989:G;154532990:C;154533004:C;154533012:CGTGGGGTCGTCCAGGTACCCTTTG;154533016:G;154533025:A;154533029:A;154533031:C;154533044:C;154533064:C;154533072:C;154533077:C;154533083:C;154533122:C;154533586:C;154533587:G;154533589:A;154533591:G;154533592:T;154533596:C;154533605:T;154533607:G;154533608:A;154533614:G;154533615:C;154533619:T;154533620:C;154533629:C;154533634:C;154534036:G;154534074:TCAGTGC;154534092:T;154534102:G;154534110:C;154534116:ATGT;154534125:C;154534126:G;154534157:A;154534345:C;154534348:T;154534387:T;154534389:C;154534390:G;154534409:G;154534414:GGGA;154534419:G;154534438:G;154534440:T;154534447:T;154534455:T;154534463:G;154534465:A;154534468:G;154534485:C;154534486:G;154534489:T;154534494:C;154534495:C;154535176:C;154535180:C;154535187:C;154535190:G;154535211:C;154535244:G;154535247:G;154535249:T;154535261:C;154535269:G;154535270:A;154535274:C;154535277:T;154535278:C;154535301:A;154535316:C;154535330:A;154535336:G;154535342:C;154535367:GCTT;154535379:G;154535962:C;154535963:G;154535980:A;154535995:T;154535996:A;154536002:C;154536008:A;154536019:G;154536021:CAGA;154536025:A;154536032:C;154536034:C;154536035:G;154536045:C;154536151:G;154536156:A;154536168:G;154536169:C;154546045:CATG;154546046:A;154546057:T;154546061:T;154546116:C;154546122:C;154546131:G;" ] }, "score": 342 } ], "haplotypes": [ { "name": "B (reference)", "haplotype": { "name": "B (reference)", "id": "PA165947826", "alleles": [ "A", "CTCT", "G", "G", "C", "C", "G", "T", "G", "C", "G", "C", "C", "C", "T", "C", "C", "G", "A", "C", "T", "C", "G", "C", "A", "C", "G", "G", "C", "T", "C", "C", "G", "G", "T", "C", "G", "T", "C", "G", "C", "C", "G", "A", "T", "T", "C", "G", "T", "G", "C", "A", "A", "A", "T", "C", "CGGCCTTGCGCTCGTTCAG", "T", "G", "G", "C", "G", "C", "C", "T", "G", "T", "G", "C", "C", "CGTGGGGTCGTCCAGGTACCCTTTG", "G", "A", "A", "C", "C", "C", "C", "C", "C", "C", "C", "G", "A", "G", "T", "C", "T", "G", "A", "G", "C", "T", "C", "C", "C", "G", "TCAGTGC", "T", "G", "C", "ATGT", "C", "G", "A", "C", "T", "T", "C", "G", "G", "GGGA", "G", "G", "T", "T", "T", "G", "A", "G", "C", "G", "T", "C", "C", "C", "C", "C", "G", "C", "G", "G", "T", "C", "G", "A", "C", "T", "C", "A", "C", "A", "G", "C", "GCTT", "G", "C", "G", "A", "T", "A", "C", "A", "G", "CAGA", "A", "C", "C", "G", "C", "G", "A", "G", "C", "CATG", "A", "T", "T", "C", "C", "G" ], "cpicAlleles": [ "A", "TTC", "G", "G", "C", "C", "G", "T", "G", "C", "G", "C", "C", "C", "T", "C", "C", "G", "A", "C", "T", "C", "G", "C", "A", "C", "G", "G", "C", "T", "C", "C", "G", "G", "T", "C", "G", "T", "C", "G", "C", "C", "G", "A", "T", "T", "C", "G", "T", "G", "C", "A", "A", "A", "T", "C", "GGCCTTGCGCTCGTTCAG", "T", "G", "G", "C", "G", "C", "C", "T", "G", "T", "G", "C", "C", "GGGGTCGTCCAGGTACCCTTTGGT", "G", "A", "A", "C", "C", "C", "C", "C", "C", "C", "C", "G", "A", "G", "T", "C", "T", "G", "A", "G", "C", "T", "C", "C", "C", "G", "AGTGCC", "T", "G", "C", "TGT", "C", "G", "A", "C", "T", "T", "C", "G", "G", "GAG", "G", "G", "T", "T", "T", "G", "A", "G", "C", "G", "T", "C", "C", "C", "C", "C", "G", "C", "G", "G", "T", "C", "G", "A", "C", "T", "C", "A", "C", "A", "G", "C", "TCT", "G", "C", "G", "A", "T", "A", "C", "A", "G", "AGA", "A", "C", "C", "G", "C", "G", "A", "G", "C", "GAT", "A", "T", "T", "C", "C", "G" ], "reference": true, "structuralVariant": false, "corePositions": [], "score": 171, "numCombinations": 0, "numPartials": 0 }, "sequences": [ "154532046:A;154532055:CTCT;154532082:G;154532083:G;154532085:C;154532086:C;154532203:G;154532231:T;154532245:G;154532257:C;154532258:G;154532264:C;154532265:C;154532269:C;154532278:T;154532279:C;154532389:C;154532390:G;154532392:A;154532403:C;154532408:T;154532411:C;154532432:G;154532434:C;154532458:A;154532459:C;154532570:G;154532590:G;154532608:C;154532623:T;154532625:C;154532626:C;154532628:G;154532629:G;154532634:T;154532639:C;154532649:G;154532661:T;154532662:C;154532667:G;154532674:C;154532676:C;154532677:G;154532679:A;154532688:T;154532692:T;154532694:C;154532695:G;154532698:T;154532699:G;154532700:C;154532701:A;154532713:A;154532715:A;154532716:T;154532722:C;154532752:CGGCCTTGCGCTCGTTCAG;154532758:T;154532765:G;154532772:G;154532773:C;154532797:G;154532802:C;154532945:C;154532956:T;154532969:G;154532987:T;154532989:G;154532990:C;154533004:C;154533012:CGTGGGGTCGTCCAGGTACCCTTTG;154533016:G;154533025:A;154533029:A;154533031:C;154533044:C;154533064:C;154533072:C;154533077:C;154533083:C;154533122:C;154533586:C;154533587:G;154533589:A;154533591:G;154533592:T;154533596:C;154533605:T;154533607:G;154533608:A;154533614:G;154533615:C;154533619:T;154533620:C;154533629:C;154533634:C;154534036:G;154534074:TCAGTGC;154534092:T;154534102:G;154534110:C;154534116:ATGT;154534125:C;154534126:G;154534157:A;154534345:C;154534348:T;154534387:T;154534389:C;154534390:G;154534409:G;154534414:GGGA;154534419:G;154534438:G;154534440:T;154534447:T;154534455:T;154534463:G;154534465:A;154534468:G;154534485:C;154534486:G;154534489:T;154534494:C;154534495:C;154535176:C;154535180:C;154535187:C;154535190:G;154535211:C;154535244:G;154535247:G;154535249:T;154535261:C;154535269:G;154535270:A;154535274:C;154535277:T;154535278:C;154535301:A;154535316:C;154535330:A;154535336:G;154535342:C;154535367:GCTT;154535379:G;154535962:C;154535963:G;154535980:A;154535995:T;154535996:A;154536002:C;154536008:A;154536019:G;154536021:CAGA;154536025:A;154536032:C;154536034:C;154536035:G;154536045:C;154536151:G;154536156:A;154536168:G;154536169:C;154546045:CATG;154546046:A;154546057:T;154546061:T;154546116:C;154546122:C;154546131:G;" ] } ], "haplotypeMatches": [], "phased": false, "variants": [ { "position": 154532046, "rsid": null, "vcfCall": "A/A", "phased": false, "phaseSet": null }, { "position": 154532055, "rsid": null, "vcfCall": "CTCT/CTCT", "phased": false, "phaseSet": null }, { "position": 154532082, "rsid": null, "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532083, "rsid": null, "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532085, "rsid": null, "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532086, "rsid": null, "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532203, "rsid": "rs137852348", "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532231, "rsid": null, "vcfCall": "T/T", "phased": false, "phaseSet": null }, { "position": 154532245, "rsid": "rs137852344", "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532257, "rsid": "rs72554664", "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532258, "rsid": null, "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532264, "rsid": "rs782608284", "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532265, "rsid": null, "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532269, "rsid": "rs72554665", "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532278, "rsid": null, "vcfCall": "T/T", "phased": false, "phaseSet": null }, { "position": 154532279, "rsid": null, "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532389, "rsid": "rs137852324", "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532390, "rsid": "rs398123546", "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532392, "rsid": null, "vcfCall": "A/A", "phased": false, "phaseSet": null }, { "position": 154532403, "rsid": null, "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532408, "rsid": null, "vcfCall": "T/T", "phased": false, "phaseSet": null }, { "position": 154532411, "rsid": "rs137852317", "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532432, "rsid": null, "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532434, "rsid": "rs137852337", "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532458, "rsid": null, "vcfCall": "A/A", "phased": false, "phaseSet": null }, { "position": 154532459, "rsid": "rs782098548", "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532570, "rsid": null, "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532590, "rsid": null, "vcfCall": "G/G", "phased": false, "phaseSet": null }, { "position": 154532608, "rsid": null, "vcfCall": "C/C", "phased": false, "phaseSet": null }, { "position": 154532623, "rsid": null, "vcfCall": "T/T", "phased": false, "phaseSet": null }, { "position": 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